Improvement of a new rotation function for molecular replacement by designing new scoring functions and dynamic correlation coefficient

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摘要 Apreviouslypublishednewrotationfunctionhasbeenimprovedbyusingadynamiccorrelationcoefficientaswellastwonewscoringfunctionsofrelativeentropyandmean-square-residuestomaketherotationfunctionmorerobustandindependentofaspecificsetofweightsforscoringandranking.ThepreviouslydescribednewrotationfunctioncalculatestherotationfunctionofmolecularreplacementbymatchingthesearchmodeldirectlywiththePattersonvectormap.Thesignal-to-noiseratioforthecorrectmatchwasincreasedbyaveragingallthematchingpeaks.Severalmatchingscoreswereemployedtoevaluatethegoodnessofmatching.Thesematchingscoreswerethencombinedintoasingletotalscorebyoptimizingasetofweightsusingthelinearregressionmethod.Itwasfoundthatthereexistsanoptimalsetofweightsthatcanbeappliedtotheglobalrotationsearchandthecorrectsolutioncanberankedinthetop100orless.However,thissetofoptimalweightsingeneralisdependentonthesearchmodelsandthecrystalstructureswithdifferentspacegroupsandcellparameters.Inthiswork,wetrytosolvethisproblembydesigningadynamiccorrelationcoefficient.Itisshownthatthedynamiccorrelationcoefficientworksforavarietyofspacegroupsandcellparametersintheglobalsearchofrotationfunction.Wealsointroducetwonewmatchingscores:relativeentropyandmean-square-residues.Lastbutnotleast,wediscussedavalidmethodfortheoptimizationoftheadjustableparametersformatchingvectors.
机构地区 不详
出处 《中国物理B:英文版》 2010年10期
出版日期 2010年10月20日(中国期刊网平台首次上网日期,不代表论文的发表时间)
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