AninvivofluorescencediscriminationtechniqueforphytoplanktonpopulationwasdevelopedbyusingWaveletpackettransform,clusteranalysisandnon-negativeleastsquares.Thetechniquewasusedtoanalyzewatersamplesfromdifferentsearegions.Forsimulativemixtures,whendominantspeciesaccountfor60%,70%,80%,90%atthepisionlevel,thecorrectdiscriminationratios(CDRs)are83.0%,99.1%,99.7%and99.9%withtherelativecontentsof58.5%,68.4%,77.7%and86.3%,respectively;whenthealgaedominanceare60%,70%,80%,90%,100%atthegenuslevel,theCDRsare86.1%,94.9%,95.2%,96.8%and96.7%,respectively.Forlaboratorymixtures,theCDRsare88.1%and78.4%atthepisionandgenuslevel,respectively.Forfieldsamples,theCDRswere91.7%and80%atthepisionandgenuslevel,respectively(mesocosmexperiments),andtheCDRswere100%and66.7%atthepisionandgenuslevel,respectively(JiaozhouBay).ThefluorometrictechniquewasusedtoestimatethephytoplanktoncommunitycompositionandrelativeabundanceofdifferentclassesfortheApril2010cruiseintheYellowSeawiththeresultsagreeingwiththoseinpublishedpapersbyotherauthors.