Small-Scale Duplications Play a Significant Role in Rice Genome Evolution

(整期优先)网络出版时间:2005-03-13
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Genesarecontinuallybeingcreatedbytheprocessesofgenomeduplication(ohnolog)andgeneduplication(paralog)Whole-genomeduplicationshavebeenfoundtobewidespreadinplantspeciesandplayanimportantroleinplantevolution.Clearlyun-overlappingduplicatedblocksofwhole-genomeduplicationscanbedetectedinthegenomeofsequencedrice(Oryzasativa).Syntenicohnologpairs(ohnologues)ofthewhole-genomeduplicationsinricewereidentifiedbasedontheirsyntenicduplicatelines.Theparalogsofohnologueswerefurtherscannedusingmulti-roundreciprocalBLASTbest-hitsearching(E<e-14).Theresultsindicatedthatanaverageof0.55sisterparalogscouldbefoundforeveryohnologueinrice.Theseresultssuggestthatsmall-scaleduplications,aswellaswhole-genomeduplications,playasignificantroleinthetwoduplicatedricegenomes.